PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g39910
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 229aa    MW: 24927.8 Da    PI: 8.7324
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g39910genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.0001695117123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC+ CgksF +   L  H  +H
  CA00g39910  95 YKCSVCGKSFGSYQALGGHKASH 117
                 9*********9999998888777 PP

2zf-C2H214.30.00012147169123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+k+F++   L  H r+H
  CA00g39910 147 HECTICHKTFPTGQALGGHKRRH 169
                 78*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.1E-994169No hitNo description
Gene3DG3DSA:3.30.160.602.2E-495118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.92895118IPR007087Zinc finger, C2H2
PfamPF139124.7E-1395119IPR007087Zinc finger, C2H2
SMARTSM003550.005895117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
PfamPF139123.1E-13146171IPR007087Zinc finger, C2H2
PROSITE profilePS501579.951147174IPR007087Zinc finger, C2H2
SMARTSM003550.039147169IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MALEALNSPS TTTPPSLFQF QHTTTQSYIE SWTKGGKRSK RSRSIMEEQR DQPIITEEEY  60
LAFCLLMLAR SGNNNNNNIT TSSATITTNS TKNLYKCSVC GKSFGSYQAL GGHKASHSKL  120
VLINGDNVSS ITTISATSAN SVSGRTHECT ICHKTFPTGQ ALGGHKRRHY EGKMTSSMDV  180
VGSANNFDLN IPALPESWPG FGSSEDELES PHPAKKSRQF PSTRLELF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2341122e-56AC234112.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 12 clone LE_HBa-95O18, complete sequence.
GenBankHG9755242e-56HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552342.11e-168PREDICTED: zinc finger protein ZAT10-like
SwissprotQ962891e-51ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLM1ATU21e-96M1ATU2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000301683e-96(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-49salt tolerance zinc finger